This scenario configures Varlociraptor to perform population calling. The model is configured with prior assumptions about mutation rate and heterozygosity. Note that you should configure these with your own expetise or via literature research. The values shown here are only examples.
Note that future versions of Varlociraptor will additionaly support quantors "any" and "all", which will make population calling more efficient and convenient.
species:
heterozygosity: 0.001
ploidy:
male:
all: 2
Y: 1
X: 1
female:
all: 2
X: 2
Y: 0
samples:
a:
sex: male
b:
sex: female
events:
present: "a:0.5 | a:1.0 | b:0.5 | b:1.0"