Module libprosic::model::sample
[−]
[src]
Structs
| InsertSize |
Expected insert size in terms of mean and standard deviation. This should be estimated from unsorted(!) bam files to avoid positional biases. |
| Observation |
An observation for or against a variant. |
| RecordBuffer |
Ringbuffer of BAM records. This data structure ensures that no bam record is read twice while extracting observations for given variants. |
| Sample |
A sequenced sample, e.g., a tumor or a normal sample. |
Enums
| Evidence | |
| RecordBufferError |
Functions
| isize_density |
Continuous normal density (obsolete). |
| isize_density_louis |
Manual normal density (obsolete, we can use GSL (see above)). |
| isize_mixture_density_louis | |
| isize_pmf |
as shown in http://www.milefoot.com/math/stat/pdfc-normaldisc.htm |
| prob_mapping |