Function libprosic::call::pairwise::call

pub fn call<A, B, P, M, R, W, X>(inbcf: &R, outbcf: &W, events: &[PairEvent<A, B>], complement_event: Option<&ComplementEvent>, pair_model: &mut PairModel<A, B, P>, omit_snvs: bool, omit_indels: bool, max_indel_len: Option<u32>, outobs: Option<&X>) -> Result<(), Box<Error>> where A: AlleleFreqs, B: AlleleFreqs, P: PairModel<A, B>, R: AsRef<Path>, W: AsRef<Path>, X: AsRef<Path>

Call variants with the given model.

Arguments

• inbcf - path to BCF/VCF with preprocessed variant calls ("-" for STDIN).
• outbcf - path to BCF/VCF with results ("-" for STDOUT).
• events - events to call
• complement_event - optional complementary event to call (e.g. absent)
• joint_model - calling model to use
• omit_snvs - omit single nucleotide variants
• omit_indels - omit indels
• outobs - optional path where to store observations as JSON

Returns

Result object with eventual error message.