Struct libprosic::model::PairModel [−] [src]

pub struct PairModel<A: AlleleFreqs, B: AlleleFreqs, P: PairModel<A, B>> {
    // some fields omitted
}

Joint variant calling model, combining two latent variable models.

Methods

impl<A: AlleleFreqs, B: AlleleFreqs, P: PairModel<A, B>> PairModel<A, B, P>
[src]

fn new(case_sample: Sample, control_sample: Sample, prior_model: P) -> Self

Create new JointModel.

Arguments

  • case_sample - case sample
  • control_sample - control sample
  • prior_model - prior model

fn pileup(&self, chrom: &[u8], start: u32, variant: Variant) -> Result<PairPileup<A, B, P>, Box<Error>>

Calculate pileup and marginal probability for given variant.

Arguments

  • chrom - the chromosome of the variant
  • start - the starting position of the variant
  • variant - the variant

Returns

The PairPileup, or an error message.